Science
I’m a PhD candidate at the Max Planck Institute for Molecular Genetics (MPI-Molgen) and the department of mathematics and computer science at the Freie University Berlin (FUB).
My advisors are :
- Prof. Dr. Knut Reinert* - Computer scientist at FUB/MPI-Molgen
Some links : Celera Genomics | Intel - Parallel Computing Center | Nvidia - CUDA Spotlight - Prof. Dr. Stefan Mundlos - Medical scientist at Charité/MPI-Molgen
New York Times covered his pioneering research about chromosomal conformation and rare genetic disease. - Prof. Dr. Martin Vingron - Computational biologist at MPI-Molgen
MPI-Molgen director
* Mentor.
Publications
+: First author, #: Corresponding author.
The SeqAn C++ Template Library for Efficient Sequence Analysis: A Resource for Programmers
Knut Reinert+#, Temesgen Dadi, Marcel Ehrhardt, Hannes Hauswedell, Rene Rahn, Jongkyu Kim, Christopher Pockrandt, Jorg Winkler, Enrico Siragusa, Gianvito Urgese and David Weese
Journal of Biotechnology - in revision
2017
Vaquita: Fast and Accurate Identification of Structural Variations using Combined Evidence
Jongkyu Kim+# and Knut Reinert
Workshop on Algorithmic Bioinformatics (WABI)
2017
General Rules for Functional MicroRNA Targeting
Doyeon Kim+, You Me Sung+, Jinman Park+, Sukjun Kim, Jongkyu Kim, Junhee Park, Haeok Ha, Jung Yoon Bae, SoHui Kim and Daehyun Baek#
Nature Genetics
2016
A Bioinformatics Platform for Comprehensive Discovery of MicroRNA-Target Interactions
Note: This platform was used in Kim(Nature Genetics, 2016).
Jongkyu Kim
Master thesis, Seoul National University
2014
The Ribonuclease Activity of SAMHD1 is required for HIV-1 restriction
Jeongmin Ryoo+, Jongsu Choi, Changhoon Oh, Sungchul Kim, Minji Seo, Seok-Young Kim, Daekwan Seo, Jongkyu Kim, Tommy E White, Alberto Brandariz-Nuñez, Felipe Diaz-Griffero, Cheol-Heui Yun, Joseph A Hollenbaugh,B aek Kim, Daehyun Baek and Kwangseog Ahn#
Nature Medicine
2014
Media: [에이즈 감염 억제할 RNA 분해효소 발견 - 한국경제신문]
Genomic Portrait of Resectable Hepatocellular Carcinomas: Implications of Rb1 and Fgf19 Aberrations for Patient Stratification
Sung-Min Ahn+, Se Jin Jang+, Ju Hyun Shim+, Deokhoon Kim+, Seung-Mo Hong, Chang Ohk Sung, Daehyun Baek, Farhan Haq, Adnan Ahmad Ansari, Sun Young Lee, Sung-Min Chun, Seongmin Choi, Hyun-Jeung Choi, Jongkyu Kim, Sukjun Kim, Shin Hwang, Young-Joo Lee, Jong-eun Lee, Wang-rim Jung, Hye Yoon Jang, Eunho Yang, Wing-Kin Sung, Nikki P. Lee, Mao Mao, Charles Lee, Jessica Zucman-Rossi, Eunsil Yu#, Han Chu Lee# and Gu Kong#
Hepatology
2014
Media: [간암유발 유전자 규명 - 조선일보]
Genomic Alterations in the RB Pathway Indicate Prognostic Outcomes of Early-Stage Lung Adenocarcinoma
Seongmin Choi+, Hyeong Ryul Kim+, Chang Ohk Sung+, Jongkyu Kim, Sukjun Kim, Sung-Min Ahn, Chang-min Choi, Sung-Min Chun, Eun Kyung Choi, Sang-We Kim, Yong-Hee Kim, Ji-Young Lee, Joon Seon Song, Deokhoon Kim, Farhan Haq, Sun Young Lee, Jong-eun Lee, Wang-rim Jung, Hye Yoon Jang, Eunho Yang, Charles Lee, Eunsil Yu, Gu Kong#, Daehyun Baek# and Se Jin Jang#
Clinical Cancer Research
2014
Media: [폐암 1위 선암 재발 유전자 발견 - 의학신문]
TALEN-based Knockout Library for Human MicroRNAs
Young-Kook Kim+, Gabbine Wee+, Joha Park, Jongkyu Kim, Daehyun Baek, Jin-Soo Kim# and V. Narry Kim#
Nature Structural & Molecular Biology
2013
Media: [세포속 원하는 마이크로RNA만 제거 기법 개발 - 전자신문]
Selective Degradation of Host MicroRNAs by an Intergenic HCMV Noncoding RNA Accelerates Virus Production
Sanghyun Lee+, Jaewon Song, Sungchul Kim, Jongkyu Kim, Yujin Hong, Youngkyun Kim, Donghyun Kim, Daehyun Baek and Kwangseog Ahn#
Cell Host & Microbe
2013
Media: [바이러스에서 마이크로RNA 분해물질 발견 - SBS]